White EJ, Venter M, Hiten NF et al (2008) Modified Cetyltrimethylammonium bromide method improves robustness and versatility: the benchmark for plant RNA extraction.
Clc genomics workbench blast at ncbi not working free#
1) Secondary structure prediction - uses a minimum free energy (MFE. Product features a number of unique and innovative bioinformatics tools for supporting advanced biochemistry and molecular biology lab research. Jones S, Baizan-Edge A, MacFarlane S et al (2017) Viral diagnostics in plants using next generation sequencing: computational analysis in practice. CLC Main Workbench includes all features and functions of CLC Protein Workbench, and CLC DNA Workbench, and CLC RNA Workbench. Visser M, Bester R, Burger JT et al (2016) Next-generation sequencing for virus detection: covering all the bases. Maliogka VI, Minafra A, Saldarelli P et al (2018) Recent advances on detection and characterization of fruit tree viruses using high-throughput sequencing technologies. Varveri C, Olmos A, Pina JA et al (2015) Biological and molecular characterization of a distinct Citrus tristeza virus isolate originating from a lemon tree in Greece. Licciardello G, Scuderi G, Ferraro R et al (2015) Deep sequencing and analysis of small RNAs in sweet orange grafted on sour orange infected with two Citrus tristeza virus isolates prevalent in Sicily. Yokomi RK, Selvaraj V, Maheshwari Y et al (2017) Identification and characterization of Citrus tristeza virus isolates breaking resistance in trifoliate orange in California. It does not depend on the availability of the NCBI BLAST blast servers. It does not rely on having a stable internet connection. Visser M, Cook G, Burger JT et al (2017) In silico analysis of the grapefruit sRNAome, transcriptome and gene regulation in response to CTV-CDVd co-infection. BLAST against local data Running BLAST searches on your local machine can have several advantages over running the searches remotely at the NCBI: It can be faster. Read D, Pietersen G (2017) Diversity of Citrus tristeza virus populations in commercial grapefruit orchards in Southern Africa, determined using Illumina MiSeq technology.
Zablocki O, Pietersen G (2014) Characterization of a novel Citrus tristeza virus genotype within three cross-protecting source GFMS12 sub-isolates in South Africa by means of Illumina sequencing.
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